PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP00460_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family LBD
Protein Properties Length: 228aa    MW: 24441.8 Da    PI: 5.6992
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP00460_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.81.2e-314107199
                         DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyG 75 
                                    +C++C+vlr++C++dC ++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG
  GSMUA_AchrUn_randomP00460_001   4 SCNGCRVLRKGCSDDCSIRPCLewirnPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYG 83 
                                    6******************************************************************************* PP

                         DUF260  76 avgvilklqqqleqlkaelallke 99 
                                    +vg+++++++ql+q++ e +l ++
  GSMUA_AchrUn_randomP00460_001  84 SVGLLWSGSWQLCQAAMESVLKGS 107
                                    ****************99988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.8133109IPR004883Lateral organ boundaries, LOB
PfamPF031952.4E-254102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDDCS IRPCLEWIRN PESQANATVF LAKFYGRAGL MNLINAGPEH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAM ESVLKGSPIV QIPSEAAAAT  120
PVPPLKAYDI RHVAKDAELH KPNAGGSGGD GDGRENESVF SADAASHVSQ GELSPAEEGE  180
VGLELTLGLE PWLRPDRAIR PAGDSRCDVS RLNADTCKVD LCLQLPVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009385423.11e-150PREDICTED: LOB domain-containing protein 40-like
SwissprotQ9M8869e-84LBD41_ARATH; LOB domain-containing protein 41
TrEMBLM0U5581e-167M0U558_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP00460_0011e-167(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-82LOB domain-containing protein 41